Association of Cardiomyopathy With MYBPC3 D389V and MYBPC3Δ25bpIntronic Deletion in South Asian Descendants | Genetics and Genomics | JAMA Cardiology | JAMA Network
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Figure 1.  Prevalence and Incomplete Penetrance of MYBPC3Δ25bp in South Asian Individuals From the United States
Prevalence and Incomplete Penetrance of MYBPC3Δ25bp in South Asian Individuals From the United States

Genotype distribution of 2401 US South Asian participants. Among carriers of the MYBPC3Δ25bp variant, 5.79% (139, dark color sector) were heterozygous, and 0.21% (5, light color sector) were homozygous. bp Indicates base pair; NC, noncarrier.

Figure 2.  Representation of D389V Rare Variant in MYBPC3Δ25bp Carriers
Representation of D389V Rare Variant in MYBPC3Δ25bp Carriers

A, Sequencing was used to identify rare protein-altering variation in 46 cardiomyopathy genes. An excess of unique singleton rare variants occurred in both MYBPC3Δ25bp carriers (light bar) and noncarriers (dark bar). D389V (arrowhead) was the only variant present in more than 5 carriers and 0 noncarriers (NCs). B, The MYBPC3 gene and cMyBP-C protein structure with the positions of D389V (green asterisks) and MYBPC3Δ25bp (red asterisk) indicated. Within the MYBPC3 gene, these 2 variants are separated by 12 kilobases (kb) (top). D389V falls in the C2 domain of cMyBP-C in a region implicated in binding myosin heavy chain (bottom).

Figure 3.  Association of MYBPC3Δ25bp and D389V in Tandem on the Same Allele With a Hyperdynamic State
Association of MYBPC3Δ25bp and D389V in Tandem on the Same Allele With a Hyperdynamic State

A, Prevalence of the D389V genotype as a subset of the MYBPC3Δ25bp carriers among all samples. B, Left ventricular ejection fraction was significantly elevated (66.7 [0.7]) in participants who carry MYBPC3Δ25bp/D389V compared with noncarriers and those with MYBPC3Δ25bp alone (1-way analysis of variance and Tukey post hoc test). bp Indicates base pair; NC, noncarrier.

Figure 4.  Cellular Hypertrophy of Cardiomyocytes With MYBPC3Δ25bp/D389V Variants
Cellular Hypertrophy of Cardiomyocytes With MYBPC3Δ25bp/D389V Variants

Cardiomyocytes were differentiated from induced pluripotent stem cells (iPSCs) from (A) a noncarrier control individual, (B) a MYBPC3Δ25bp carrier (Δ25bp), and (C) a carrier of MYBPC3Δ25bp/D389V (Δ25bp/D389V). Cells stained for cardiac α-actinin (green) and nuclei (blue) were compared, and those with MYBPC3Δ25bp/D389V were larger than controls and MYBPC3Δ25bp alone. Scale bar: 100 μm. D, Graphic representation of cell size (n = 27 per cell line). One-way analysis of variance and Tukey post hoc test were used. bp Indicates base pair.

Table.  Sample Cohort, Clinical Risk Factors, ECG, and Echocardiographic Data
Sample Cohort, Clinical Risk Factors, ECG, and Echocardiographic Data
1.
Maron  BJ.  Hypertrophic cardiomyopathy: an important global disease.  Am J Med. 2004;116(1):63-65.PubMedGoogle ScholarCrossref
2.
Gersh  BJ, Maron  BJ, Bonow  RO,  et al; American College of Cardiology Foundation/American Heart Association Task Force on Practice; American Association for Thoracic Surgery; American Society of Echocardiography; American Society of Nuclear Cardiology; Heart Failure Society of America; Heart Rhythm Society; Society for Cardiovascular Angiography and Interventions; Society of Thoracic Surgeons.  2011 ACCF/AHA guideline for the diagnosis and treatment of hypertrophic cardiomyopathy: a report of the American College of Cardiology Foundation/American Heart Association Task Force on Practice Guidelines.  J Thorac Cardiovasc Surg. 2011;142(6):e153-e203.PubMedGoogle ScholarCrossref
3.
Maron  BJ.  Hypertrophic cardiomyopathy: a systematic review.  JAMA. 2002;287(10):1308-1320.PubMedGoogle ScholarCrossref
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Richard  P, Charron  P, Carrier  L,  et al; EUROGENE Heart Failure Project.  Hypertrophic cardiomyopathy: distribution of disease genes, spectrum of mutations, and implications for a molecular diagnosis strategy.  Circulation. 2003;107(17):2227-2232.PubMedGoogle ScholarCrossref
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Kensler  RW, Shaffer  JF, Harris  SP.  Binding of the N-terminal fragment C0-C2 of cardiac MyBP-C to cardiac F-actin.  J Struct Biol. 2011;174(1):44-51.PubMedGoogle ScholarCrossref
6.
Gruen  M, Gautel  M.  Mutations in beta-myosin S2 that cause familial hypertrophic cardiomyopathy (FHC) abolish the interaction with the regulatory domain of myosin-binding protein-C.  J Mol Biol. 1999;286(3):933-949.PubMedGoogle ScholarCrossref
7.
Sadayappan  S, Osinska  H, Klevitsky  R,  et al.  Cardiac myosin binding protein C phosphorylation is cardioprotective.  Proc Natl Acad Sci U S A. 2006;103(45):16918-16923.PubMedGoogle ScholarCrossref
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Waldmüller  S, Sakthivel  S, Saadi  AV,  et al.  Novel deletions in MYH7 and MYBPC3 identified in Indian families with familial hypertrophic cardiomyopathy.  J Mol Cell Cardiol. 2003;35(6):623-636.PubMedGoogle ScholarCrossref
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Dhandapany  PS, Sadayappan  S, Xue  Y,  et al.  A common MYBPC3 (cardiac myosin binding protein C) variant associated with cardiomyopathies in South Asia.  Nat Genet. 2009;41(2):187-191.PubMedGoogle ScholarCrossref
10.
Kuster  DW, Sadayappan  S.  MYBPC3's alternate ending: consequences and therapeutic implications of a highly prevalent 25 bp deletion mutation.  Pflugers Arch. 2014;466(2):207-213.PubMedGoogle ScholarCrossref
11.
Srivastava  A, Garg  N, Mittal  T,  et al.  Association of 25 bp deletion in MYBPC3 gene with left ventricle dysfunction in coronary artery disease patients.  PLoS One. 2011;6(9):e24123.PubMedGoogle ScholarCrossref
12.
Kumar  S, Mishra  A, Srivastava  A,  et al.  Role of common sarcomeric gene polymorphisms in genetic susceptibility to left ventricular dysfunction.  J Genet. 2016;95(2):263-272.PubMedGoogle ScholarCrossref
13.
Bashyam  MD, Purushotham  G, Chaudhary  AK,  et al.  A low prevalence of MYH7/MYBPC3 mutations among familial hypertrophic cardiomyopathy patients in India.  Mol Cell Biochem. 2012;360(1-2):373-382.PubMedGoogle ScholarCrossref
14.
Tanjore  RR, Rangaraju  A, Kerkar  PG, Calambur  N, Nallari  P.  MYBPC3 gene variations in hypertrophic cardiomyopathy patients in India.  Can J Cardiol. 2008;24(2):127-130.PubMedGoogle ScholarCrossref
15.
Kraker  J, Viswanathan  SK, Knöll  R, Sadayappan  S.  Recent advances in the molecular genetics of familial hypertrophic cardiomyopathy in South Asian descendants.  Front Physiol. 2016;7:499.PubMedGoogle ScholarCrossref
16.
Puckelwartz  MJ, Pesce  LL, Nelakuditi  V,  et al.  Supercomputing for the parallelization of whole genome analysis.  Bioinformatics. 2014;30(11):1508-1513.PubMedGoogle ScholarCrossref
17.
Cingolani  P, Platts  A, Wang  L,  et al.  A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3.  Fly (Austin). 2012;6(2):80-92.PubMedGoogle ScholarCrossref
18.
Lek  M, Karczewski  KJ, Minikel  EV,  et al; Exome Aggregation Consortium.  Analysis of protein-coding genetic variation in 60,706 humans.  Nature. 2016;536(7616):285-291.PubMedGoogle ScholarCrossref
19.
Mehta  A, Chung  Y, Sequiera  GL, Wong  P, Liew  R, Shim  W.  Pharmacoelectrophysiology of viral-free induced pluripotent stem cell-derived human cardiomyocytes.  Toxicol Sci. 2013;131(2):458-469.PubMedGoogle ScholarCrossref
20.
Mehta  A, Ramachandra  CJ, Sequiera  GL,  et al.  Phasic modulation of Wnt signaling enhances cardiac differentiation in human pluripotent stem cells by recapitulating developmental ontogeny.  Biochim Biophys Acta. 2014;1843(11):2394-2402.PubMedGoogle ScholarCrossref
21.
Roberts  AM, Ware  JS, Herman  DS,  et al.  Integrated allelic, transcriptional, and phenomic dissection of the cardiac effects of titin truncations in health and disease.  Sci Transl Med. 2015;7(270):270ra6.PubMedGoogle ScholarCrossref
22.
Golbus  JR, Puckelwartz  MJ, Fahrenbach  JP, Dellefave-Castillo  LM, Wolfgeher  D, McNally  EM.  Population-based variation in cardiomyopathy genes.  Circ Cardiovasc Genet. 2012;5(4):391-399.PubMedGoogle ScholarCrossref
23.
Herman  DS, Lam  L, Taylor  MR,  et al.  Truncations of titin causing dilated cardiomyopathy.  N Engl J Med. 2012;366(7):619-628.PubMedGoogle ScholarCrossref
24.
McNamara  JW, Li  A, Lal  S,  et al.  MYBPC3 mutations are associated with a reduced super-relaxed state in patients with hypertrophic cardiomyopathy.  PLoS One. 2017;12(6):e0180064.PubMedGoogle ScholarCrossref
25.
Ho  CY, Day  SM, Colan  SD,  et al; HCMNet Investigators.  The burden of early phenotypes and the influence of wall thickness in hypertrophic cardiomyopathy mutation carriers: findings from the HCMNet Study.  JAMA Cardiol. 2017;2(4):419-428.PubMedGoogle ScholarCrossref
26.
Simonson  TS, Zhang  Y, Huff  CD,  et al.  Limited distribution of a cardiomyopathy-associated variant in India.  Ann Hum Genet. 2010;74(2):184-188.PubMedGoogle ScholarCrossref
27.
Zahka  K, Kalidas  K, Simpson  MA,  et al.  Homozygous mutation of MYBPC3 associated with severe infantile hypertrophic cardiomyopathy at high frequency among the Amish.  Heart. 2008;94(10):1326-1330.PubMedGoogle ScholarCrossref
28.
Dellefave  LM, Pytel  P, Mewborn  S,  et al.  Sarcomere mutations in cardiomyopathy with left ventricular hypertrabeculation.  Circ Cardiovasc Genet. 2009;2(5):442-449.PubMedGoogle ScholarCrossref
29.
Finsterer  J, Zarrouk-Mahjoub  S.  Left ventricular noncompaction associated with a compound heterozygous MYBPC3 mutation.  Eur J Med Genet. 2014;57(7):349.PubMedGoogle ScholarCrossref
30.
Wessels  MW, Herkert  JC, Frohn-Mulder  IM,  et al.  Compound heterozygous or homozygous truncating MYBPC3 mutations cause lethal cardiomyopathy with features of noncompaction and septal defects.  Eur J Hum Genet. 2015;23(7):922-928.PubMedGoogle ScholarCrossref
31.
Ratti  J, Rostkova  E, Gautel  M, Pfuhl  M.  Structure and interactions of myosin-binding protein C domain C0: cardiac-specific regulation of myosin at its neck?  J Biol Chem. 2011;286(14):12650-12658.PubMedGoogle ScholarCrossref
32.
Rüssel  IK, Brouwer  WP, Germans  T,  et al.  Increased left ventricular torsion in hypertrophic cardiomyopathy mutation carriers with normal wall thickness.  J Cardiovasc Magn Reson. 2011;13:3.PubMedGoogle ScholarCrossref
33.
Timmer  SA, Germans  T, Brouwer  WP,  et al.  Carriers of the hypertrophic cardiomyopathy MYBPC3 mutation are characterized by reduced myocardial efficiency in the absence of hypertrophy and microvascular dysfunction.  Eur J Heart Fail. 2011;13(12):1283-1289.PubMedGoogle ScholarCrossref
34.
Knöll  R.  Myosin binding protein C: implications for signal-transduction.  J Muscle Res Cell Motil. 2012;33(1):31-42.PubMedGoogle ScholarCrossref
35.
Green  EM, Wakimoto  H, Anderson  RL,  et al.  A small-molecule inhibitor of sarcomere contractility suppresses hypertrophic cardiomyopathy in mice.  Science. 2016;351(6273):617-621.PubMedGoogle ScholarCrossref
Original Investigation
June 2018

Association of Cardiomyopathy With MYBPC3 D389V and MYBPC3Δ25bpIntronic Deletion in South Asian Descendants

Author Affiliations
  • 1Heart, Lung and Vascular Institute, Department of Internal Medicine, University of Cincinnati, Cincinnati, Ohio
  • 2Department of Cell and Molecular Physiology, Loyola University Chicago, Maywood, Illinois
  • 3Center for Genetic Medicine, Northwestern University, Chicago, Illinois
  • 4National Heart Research Institute Singapore
  • 5Cardiovascular Academic Clinical Program, DUKE-NUS Medical School, Singapore
  • 6PSC and Phenotyping Laboratory, Victor Chang Cardiac Research Institute, Sydney, Australia
  • 7Cardiovascular and Metabolic Disease Innovative Medicines and Early Development Unit, AstraZeneca Research and Development, Gothenburg, Sweden
  • 8Cardiovascular and Metabolic Disorders Program, DUKE-NUS Medical School, Singapore
  • 9Department of Cardiology, National Heart Centre Singapore, Singapore
  • 10Department of Biotechnology, Indian Institute of Technology Madras, Chennai, Tamilnadu, India
  • 11Department of Public Health Sciences, Loyola University Chicago, Maywood, Illinois
  • 12Computation Institute, The University of Chicago, Chicago, Illinois
  • 13Divison of Hematology and Oncology, University of Illinois at Chicago
  • 14St Elizabeth Physicians Heart and Vascular, Florence, Kentucky
  • 15Heart Institute, Cincinnati Children’s Hospital, Cincinnati, Ohio
  • 16Marcella Niehoff School of Nursing, Loyola University Chicago, Maywood, Illinois
  • 17Department of Cardiology and Echocardiography and Cardiographics, Loyola University Chicago, Maywood, Illinois
  • 18Integrated Cardio-Metabolic Centre, Myocardial Genetics, Karolinska Institutet, University Hospital, Heart and Vascular Theme, Stockholm, Sweden
  • 19Associate Editor for Translational Science, JAMA Cardiology
JAMA Cardiol. 2018;3(6):481-488. doi:10.1001/jamacardio.2018.0618
Key Points

Question  Are there additional genetic factors that contribute to the cardiomyopathic expression of MYBPC3Δ25bp variant, which is found in nearly 100 million individuals worldwide?

Findings  In this genotype-phenotype study, MYBPC3Δ25bp was found in 6% of 2401 South Asian individuals living in the United States, and genetic and phenotypic characterization of a subset identified distinct populations within this heterogeneous group. Specifically, 9.6% of MYBPC3Δ25bp carriers also had a novel MYBPC3 variant, D389V, on the same single allele, and this subset had hyperdynamic findings on echocardiogram.

Meaning  Additional genetic variants, specifically D389V, were associated with the variable cardiomyopathic findings linked to MYBPC3Δ25bp.

Abstract

Importance  The genetic variant MYBPC3Δ25bp occurs in 4% of South Asian descendants, with an estimated 100 million carriers worldwide. MYBPC3 Δ25bp has been linked to cardiomyopathy and heart failure. However, the high prevalence of MYBPC3Δ25bp suggests that other stressors act in concert with MYBPC3Δ25bp.

Objective  To determine whether there are additional genetic factors that contribute to the cardiomyopathic expression of MYBPC3Δ25bp.

Design, Setting, andParticipants  South Asian individuals living in the United States were screened for MYBPC3Δ25bp, and a subgroup was clinically evaluated using electrocardiograms and echocardiograms at Loyola University, Chicago, Illinois, between January 2015 and July 2016.

Main Outcomes and Measures  Next-generation sequencing of 174 cardiovascular disease genes was applied to identify additional modifying gene mutations and correlate genotype-phenotype parameters. Cardiomyocytes derived from human-induced pluripotent stem cells were established and examined to assess the role of MYBPC3Δ25bp.

Results  In this genotype-phenotype study, individuals of South Asian descent living in the United States from both sexes (36.23% female) with a mean population age of 48.92 years (range, 18-84 years) were recruited. Genetic screening of 2401 US South Asian individuals found an MYBPC3Δ25bpcarrier frequency of 6%. A higher frequency of missense TTN variation was found in MYBPC3Δ25bp carriers compared with noncarriers, identifying distinct genetic backgrounds within the MYBPC3Δ25bp carrier group. Strikingly, 9.6% of MYBPC3Δ25bp carriers also had a novel MYBPC3 variant, D389V. Family studies documented D389V was in tandem on the same allele as MYBPC3Δ25bp, and D389V was only seen in the presence of MYBPC3Δ25bp. In contrast to MYBPC3Δ25bp, MYBPC3Δ25bp/D389V was associated with hyperdynamic left ventricular performance (mean [SEM] left ventricular ejection fraction, 66.7 [0.7%]; left ventricular fractional shortening, 36.6 [0.6%]; P < .03) and stem cell–derived cardiomyocytes exhibited cellular hypertrophy with abnormal Ca2+ transients.

Conclusions and Relevance  MYBPC3Δ25bp/D389V is associated with hyperdynamic features, which are an early finding in hypertrophic cardiomyopathy and thought to reflect an unfavorable energetic state. These findings support that a subset of MYBPC3Δ25bp carriers, those with D389V, account for the increased risk attributed to MYBPC3Δ25bp.

Introduction

Hypertrophic cardiomyopathy (HCM) is a global genetic heart disease affecting approximately 600 000 people in the United States and 14.25 million people worldwide.1 Hypertrophic cardiomyopathy, characterized by excessive left ventricular thickening, features of diastolic dysfunction, left ventricular outflow obstruction, arrhythmia, myocardial ischemia, mitral regurgitation, and sudden death,2,3 is mainly caused by mutations in sarcomeric genes. Mutations in the thick filament protein-encoding genes MYH7 and MYBPC3 together constitute more than 80% of inherited cases.4,5MYBPC3 encodes cardiac myosin binding protein-C (cMyBP-C), a vital protein for cardiac performance6 and regulator of cardiac contractility in response to adrenergic stimulation.7

A 25–base pair deletion within intron 32 of the MYBPC3 gene (MYBPC3Δ25bp) was previously described as a risk factor for cardiomyopathy8 and heart failure9 in South Asian individuals, with an odds ratio of 6.99 for cardiomyopathy in MYBPC3Δ25bp carriers.10 Although this genetic variant was discovered and examined in South Asian individuals living in Asia, it is estimated that 100 million people carry the MYBPC3Δ25bp variant.9 Genetically, MYBPC3Δ25bp is characterized by incomplete penetrance and variable expressivity.8,9MYBPC3Δ25bp is associated with a range of outcomes from asymptomatic normal hearts to diastolic dysfunction; hypertrophic, dilated, and restrictive cardiomyopathies with tachyarrhythmias9; and left ventricular dysfunction in the setting of coronary artery disease.11,12 Cardiomyopathy features are increased when MYBPC3Δ25bp occurs in the presence of other sarcomere gene mutations,8,13,14 explaining some of the variable expression seen with MYBPC3Δ25bp. South Asian individuals have been the fastest-growing ethnic group in the world during the past decade, and defining genetic risk factors in this population has substantial clinical effect.15 The high prevalence of MYBPC3Δ25bp in South Asian individuals exceeds the incidence of cardiomyopathy and heart failure,8 indicating that MYBPC3Δ25bp on its own is not sufficient to cause cardiomyopathy and modifying factors add to its risk. Therefore, we undertook a systematic study of clinical and genetic screening to find MYBPC3Δ25bp carriers among South Asian individuals who migrated to the United States to better define the cardiovascular findings associated with MYBPC3Δ25bp.

Methods
Institutional Review Board Approval

This study was performed in accordance with the Declaration of Helsinki. All experimental protocols were approved by the institutional review board of the host institutes (Loyola University Chicago institutional review board [LU207815 and 207359], Chicago, Illinois, and SingHealth institutional review board [CIRB 2015/2521], Singapore).

Sample Collection and Genotyping

Participants were prospectively recruited and enrolled through community engagement at local venues. Saliva samples (3-5 mL) were collected in either sterile 15-mL tubes and frozen at −20°C or using the Saliva DNA Sample Collection Kit (Cat OG-500, DNA Genotek) and stored at ambient temperature. Blood samples for genotyping were collected in EDTA vacutainers (Catalog No. 367861; BD Bioscience), and DNA was isolated using the Blood DNA Isolation Kit (Catalog No. 51104; Qiagen). Polymerase chain reaction amplification of MYBPC3Δ25bp (rs36212066) used the forward primer 5′-GTT TCC AGC CTT GGG CATAGT C-3′ and reverse primer 5′-GAG GAC AAC GGA GCA AAG CCC-3′, using REDTaq PCR master mix (Sigma-Aldrich) and 2.5% agarose gel analysis. DNA samples for sequencing were isolated from 10 mL of peripheral blood, as described previously, using the Blood DNA Isolation Kit (Catalog No. 51104; Qiagen). Participants in the United States who were positive for the MYBPC3Δ25bp variant, their first-degree relatives, or random control individuals were contacted in a single-blinded manner to participate in the follow-up genotype-phenotype study at Loyola University Chicago (LU207377 and LU207813), for which they provided additional written informed consent. Participants were provided a questionnaire pertaining to ethnic background, health history, family history, comorbid conditions, and current medications. The questionnaire was completed on a voluntary basis, and questions were answered only to the extent that each participant was willing.

Measuring Cardiac Function in US South Asian Individuals

Twelve-lead electrocardiograms with rhythm strips were performed at rest in a supine position using a MAC 5500 HD (GE Healthcare). Tracings were interpreted blinded to genotype. Two-dimensional (2-D) echocardiography and Doppler examinaton were performed from standard transthoracic windows using Acuson Sequoia (Siemens Medical Solutions) and Vivid 7 (GE Healthcare). Echocardiograms were interpreted by a reader blinded to genotype. Left ventricular (LV) internal diastolic diameter, end-diastolic thickness of the posterior wall and anterior interventricular septum were measured using 2-D echo. Left ventricular mass was determined using the Devereux formula and indexed for body surface area. Relative wall thickness was obtained using the formula (2 times posterior wall thickness in diastole) divided by LV diastolic dimension. Left ventricular ejection fraction (LVEF) and left ventricular fractional shortening (LVFS) were calculated using Biplane Simpson method. Left ventricular diastolic function was evaluated using tissue Doppler velocities of mitral annulus as well as transmitral pulsed wave Doppler velocities. Medial and lateral tissue Doppler (e′) velocities were measured by placing the sample volume at the base of the interventricular septum and anterolateral wall in apical 4-chamber view immediately below the mitral annulus. Transmitral Doppler tracings were obtained by placing the sample volume in the left ventricle at the tip of the mitral valve leaflets. Early (E-wave) and late (A-wave) diastolic transmitral velocities, E to A ratio, and deceleration time were measured from transmitral Doppler tracings. Apical 4-chamber and 2-chamber views were used to determine left atrial area and length.

DNA Sequence Analysis

The TruSight Cardio Kit (Catalog No. FC-141-1011; Illumina) was used to sequence 174 cardiovascular disease genes (eTable 1 in the Supplement) on an Illumina MiSeq with 150–base pair paired-end reads. Sequences were aligned using the Burrows-Wheeler Aligner, and the GATK haplotype caller was applied to generate variant call files as described.16 Variants were interpreted with SnpEff, and HIGH (stop gain/loss, splice site, frameshifts) and MODERATE (missense) effect variants were curated.17 Variants were ranked by minor allele frequency based on data from ExAC.18 Variant call files were filtered for variants in 46 genes specifically involved in cardiomyopathy, with an ExAC frequency of 0.01 or less (eTable 1 in the Supplement). The number of variants identified in each gene was normalized to cohort size, and MYBPC3Δ25bp carriers and noncarriers were compared. TTN variant comparisons were made with an unpaired t test. Fisher exact test was used to compare individual variants in carriers vs noncarriers. A 1-way analysis of variance was used to compare functional cardiac measures in noncarriers, MYBPC3Δ25bp, and MYBPC3Δ25bp/D389V participant, followed by Tukey multiple comparisons test. Statistical analyses were performed using Prism 7 (GraphPad).

Generation of Human-Induced Pluripotent Stem Cells and Cardiomyocyte Differentiation

Genotype-positive and genotype-negative participants were recruited to generate induced pluripotent stem cells (iPSCs). Peripheral blood mononuclear cells were isolated from whole blood (5 mL) using Ficoll-Paque (GE Healthcare Life Sciences) and cultured in peripheral blood mononuclear cell medium. Peripheral blood mononuclear cells were transduced using CytoTune-iPS 2.0 Sendai Reprogramming Kit (Thermo Fisher Scientific), all performed according to the manufacturers’ instructions. Colonies that appeared underwent clonal expansion and were maintained in feeder-free conditions.19 Human iPSCs were differentiated into cardiomyocytes using an embryoid body–based protocol.20 Briefly, iPSCs were dissociated into single cells and aggregated into embryoid bodies with stage-specific media changes for the next 8 days. Embryoid bodies were plated on gelatin-coated dishes on day 8 and maintained in embryoid body–2 medium (Dulbecco modified eagle medium/F12 with 2% fetal bovine serum).

Imaging and Protein Analysis of Ca2+ Transients

Imaging of Ca2+ transients was performed on isolated single CMs generated from human iPSCs and seeded on matrix-coated slides using the Ca2+ probe fluo-4-acetoxymethyl ester (Fluo-4AM). Signals were captured using a high frame rate Cascade EMCCD camera (Photometrics) and analyzed using MetaMorph software, version 7 (Molecular Devices).

Statistical Analysis

Results were reported as mean (SE) of independent experiments. The comparison between 2 groups was performed using the t test, whereas to compare multiple groups, 1-way analysis of variance followed by Kruskal-Wallis analysis was used. A 2-sided P value less than .05 was considered statistically significant.

Results
Prevalence of MYBPC3Δ25bp US South Asian Individuals

Most HCM-causing MYBPC3 mutations are dominantly inherited; however, MYBPC3Δ25bp has a more complex effect because its population prevalence significantly exceeds that of HCM.8,9 We randomly screened for the presence of MYBPC3Δ25bp among US South Asian individuals. During a 2-year period, we evaluated 2401 US South Asian participants from several cities in the United States. Using a polymerase chain reaction–based assay (eFigure 1A in the Supplement), the population frequency of the MYBPC3Δ25bp variant in US South Asian individuals was 6%, including both heterozygous (5.79%) and homozygous (0.21%) carriers (139 of 2401 and 5 of 2401, respectively) (Figure 1), as measured from a diverse age group (eFigure 1B in the Supplement). These values are higher than the previously reported prevalence of approximately 4.0% in South Asian individuals.9 The variant allele frequency was 3.14% with a Fisher exact test P value of .03, indicating that the variant’s distribution follows Hardy-Weinberg equilibrium.

Clinical Findings in US South Asian MYBPC3Δ25bp Carriers

To further characterize the association between the MYBPC3Δ25bp variant and the presence of cardiomyopathy in US South Asian individuals, cardiac phenotype was assessed using 12-lead electrocardiogram and echocardiogram in carriers (n = 47, 43 heterozygous and 4 homozygous) and noncarriers (n = 35) at a single time. Mean (SE) age at the time of study in noncarriers and carriers was 45.1 (1.71) years and 47.6 (1.73) years (P = .31), respectively (Table). Blood pressure was not significantly different between noncarriers and carriers (Table), and both noncarriers and carriers showed normal correlation between mean arterial pressure and body surface area (eFigure 1C in the Supplement). Comparing echocardiographic parameters indicative of HCM, such as relative wall thickness, intraventricular septal thickness, LV posterior wall thickness, and mitral inflow pattern (E/e′ ratio) (eFigure 1D-G in the Supplement) revealed no significant differences between the groups. The percent LVFS (eFigure 1H in the Supplement), but not LVEF (eFigure 1I in the Supplement), showed a small but significant increase between MYBPC3Δ25bp carriers and noncarriers. Collectively, these data demonstrate that the MYBPC3Δ25bp variant alone does not elicit an overt HCM phenotype.

Genetically Distinct Subgroups Among MYBPC3Δ25bp Carriers

Because population reports of MYBPC3Δ25bp carriers suggest incomplete penetrance and an increased frequency among bona fide HCM patients,9 we evaluated the possibility of other cardiomyopathy variants existing in MYBPC3Δ25bp carriers using targeted sequencing on 72 participants. A panel of 174 cardiovascular disease–associated genes was sequenced and evaluated for protein-altering variants with moderate and high effect, as interpreted by snpEff.17 Forty-six genes from this panel are specifically linked to cardiomyopathy. We analyzed protein-altering variants including nonsense and nonsynonymous changes in only these 46 cardiomyopathy genes (eTable 1 in the Supplement). Protein-altering variant numbers were normalized to cohort size; the MYBPC3Δ25bp carrier group had a 1.4-fold excess of rare variants compared with the noncarrier group; this difference was not significant in the context of the small sample size. The genes with variants are depicted in eFigure 2A in the Supplement, with rare being defined as a global ExAC minor allele frequency of 0.01 or less. MYBPC3Δ25bp carriers had 4.8 rare protein-altering variants per individual, while noncarriers had 3.4, consistent with a distinct genetic background between MYBPC3Δ25bp carriers and noncarriers (eTables 2-3 in the Supplement).

We separately considered protein-altering variants in TTN, which encodes the giant protein titin. TTN truncating mutations are linked to heart failure and cardiomyopathy.21,22TTN is also uniquely enriched with an extraordinarily high degree of missense variants of unclear functional impact. We reasoned that the signature of TTN variation could be used to identify subgroups within the cohort of MYBPC3Δ25bp carriers. MYBPC3Δ25bp carriers had an excess of rare TTN variants (3.2 counts), compared with noncarriers (2.4 counts) per participant (eFigure 2B in the Supplement). Using the South Asian (SAS) population frequencies from ExAC,18 population frequency differed for TTN variants in MYBPC3Δ25bp carriers compared with the noncarrier group. The mean (SE) ExAC_SAS frequency of TTN variants in MYBPC3Δ25bp carriers was 0.010 (0.0009) compared with 0.005 (0.001) in noncarriers (P < .001) (eFigure 2C in the Supplement), suggesting a distinct genetic landscape between MYBPC3Δ25bp carriers and noncarriers. When using the Non-Finnish European ExAC population frequencies, we found no difference between carriers and noncarriers for TTN variants. In addition, when evaluating other cardiomyopathy genes, we saw no significant difference between the carriers and noncarriers using ExAC_SAS frequencies. Thus, the distinct TTN landscape in MYBPC3Δ25bp carriers is both population- and gene-specific (eFigure 2 in the Supplement). Because TTN truncating variants are highly enriched in dilated cardiomyopathy,23 we separately evaluated TTN truncating variants. Two TTN truncating variants were identified in the cohort: a frameshift variant in a MYBPC3Δ25bp carrier and an early termination variant in a noncarrier, both of which are part of exon 48 of the Novex-3 transcript and unlikely to be important for the pathogenesis of cardiac dysfunction, suggesting that TTN truncating variants do not account for differences between MYBPC3Δ25bp carriers and noncarriers. Overall, the TTN genetic signature in MYBPC3Δ25bp carriers marks population stratification within the analyzed US South Asian cohort.

A Novel Second Variant in MYBPC3 Identified in MYBPC3Δ25bp Carriers

We found a novel MYBPC3 missense single-nucleotide polymorphism in a subset of MYBPC3Δ25bp carriers encoding an A to T nucleotide change at chr11:47365100, producing a missense aspartic acid (D) to valine (V) variant at amino acid 389 in cMyBP-C (D389V) (Figure 2A and eFigure 3A in the Supplement). D389V was the only variant found to be significantly enriched in MYBPC3Δ25bp carriers and was not identified in noncarriers (Fisher exact test 0.0019, eTable 4 in the Supplement). D389V localizes in MYBPC3 exon 12 at the interface between C2 domain of the cMyBP-C and the S2 domain of myosin (Figure 2B and eFigure 3B in the Supplement). This domain interface directly regulates the superrelaxed state of cardiac contraction.24 The glutamic acid in position 389 of the protein has been conserved among various species (eFigure 3C in the Supplement). We next screened specifically for the D389V variant and determined its presence in 13 of 136 MYBPC3Δ25bp carriers (9.6%) and absence in 1488 US South Asian individuals who do not carry the MYBPC3∆25 allele (Figure 3A). D389V variant was carried in tandem on the same allele as MYBPC3Δ25bp, as confirmed by family studies (eFigure 4A in the Supplement). D389V variant was never seen in the absence of MYBPC3Δ25bp. Thus, it is likely that MYBPC3D389V arose on the background of the MYBPC3Δ25bp allele. We reevaluated the echocardiographic findings, excluding those with confounding genetic variants or confounding comorbidities (eTable 5 in the Supplement). Left ventricular ejection fraction and LVFS were significantly increased in those carrying D389V plus MYBPC3Δ25bp (mean [SD] LVEF, 66.7% [0.7%]; LVFS, 36.6% [0.6%]; P = .03; n = 9) compared with MYBPC3Δ25bp carriers (mean [SD] LVEF, 61.7 [1.2], LVFS, 34.3 [1.2]) and noncarriers (mean [SD] LVEF, 60.6 [1.1]; LVFS, 32.3 [0.8]) (Figure 3B; eFigure 4B in the Supplement), consistent with a hyperdynamic state and similar to what has been described in early HCM.25

Human-Induced Pluripotent Stem Cell–Derived Cardiomyocytes Carrying D389V Recapitulated HCM-Like Phenotypes

To better understand the cellular phenotype linked to MYBPC3Δ25bp/D389V, we examined human cardiomyocytes derived from iPSCs. Strikingly, cardiomyocytes derived from 2 individuals with MYBPC3Δ25bp/D389V were significantly more hypertrophic compared with control cardiomyocytes and cardiomyocytes with MYBPC3Δ25bp alone (Figure 4A and B), consistent with a hypertrophic cellular phenotype. An increased frequency of arrhythmic cells as well as ectopic Ca2+ transients were observed, in cardiomyocytes with MYBPC3Δ25bp/D389V compared with MYBPC3Δ25bp alone or control cells (eFigure 4C and D in the Supplement). Collectively, these data show that the single MYBPC3Δ25bp/D389V variant allele is associated with a hyperdynamic, hypertrophic, and arrhythmogenic state, consistent with an HCM-like substrate.25

Discussion

The MYBPC3Δ25bp variant is carried by 5% to 6% of the large and diverse South Asian population.9,26 Because this exceeds the incidence of heart failure, other factors, both genetic and environmental, were hypothesized to contribute to risk associated with MYBPC3Δ25bp.9,11,12 Armed with deep sequencing of additional cardiomyopathy genes from MYBPC3Δ25bp carriers and noncarriers, we identified a unique signature of TTN missense variation between MYBPC3Δ25bp carriers and noncarriers, suggesting discrete cohorts within the MYBPC3Δ25bp carrier group. The pathophysiologic significance of the TTN variation, if any, is not known. Other cardiomyopathy genes did not display this same pattern of enrichment in MYBPC3Δ25bp carriers compared with noncarriers, with the exception of MYBPC3 itself.

Unexpectedly, we identified a novel variant in MYBPC3 that cosegregates with the MYBPC3Δ25bp variant. This new variant, D389V (chr11:47365100A>T), was seen in 13 of 136 (9.6%) of MYBPC3Δ25bp carriers, putting prevalence of the MYBPC3Δ25bp/D389V allele at 1 in 200 South Asian individuals. MYBPC3 variants have been described in combination with other genetic variants in the setting of dilated cardiomyopathy and heart failure, consistent with an oligogenic model of disease.27-30 However, distinct from these previous studies, D389V and MYBPC3Δ25bp are found together on the same single allele, and D389V was never observed in the absence of MYBPC3Δ25bp. D389V maps near the beginning of immunoglobulin-like domain C2 in cMyBP-C protein, a region that is known to directly interact with the neck region of β-myosin heavy chain (S2-region), effectively regulating the engagement and interaction of myosin heads with actin filaments.31 In silico tools predict D389V to be highly disruptive to protein function owing to the exchange of the highly conserved charged amino acid for a nonpolar moiety.

Limitations

This study specifically focused on 48 genes, mutations in which are known to cause cardiomyopathy. Systematic analysis of the additional sequenced genes could yield other cosegregating gene variations. The sample size in this study is relatively small, but proportional considering South Asian individuals represent about 1.0% of the United States population.

Conclusions

MYBPC3Δ25bp in the context of D389V may be an important marker of cardiac health. MYBPC3Δ25bp/D389V, especially when combined with additional cardiac stressors, could prove suitable substrate for cardiomyopathy development and heart failure. Specifically, those with single MYBPC3Δ25bp/D389V allele had increased LVEF. The hyperdynamic phase of HCM is recognized as an early feature of HCM, and despite an appearance of hyperperformance is one that is deceivingly energetically unfavorable.25,32,33 At a cellular level, iPSC-derived cardiomyocytes with MYBPC3Δ25bp/D389V had hypertrophy and increased frequency of abnormal Ca2+ transients. Ca2+ hypersensitivity and hyperdynamic ventricles are viewed as an early compensation or adaptation for the unfavorable energetic state and altered myocyte signaling.34 Importantly, this hyperdynamic state in HCM is viewed as a target for drug development and intervention.35

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Article Information

Corresponding Author: Sakthivel Sadayappan, PhD, MBA, Heart, Lung and Vascular Institute, Department of Internal Medicine, University of Cincinnati, 231 Albert Sabin Way, Cincinnati, OH 45267 (sadayasl@ucmail.uc.edu).

Accepted for Publication: February 17, 2018.

Published Online: April 11, 2018. doi:10.1001/jamacardio.2018.0618

Author Contributions: Drs Sadayappan and McNally had full access to all the data in the study and take responsibility for the integrity of the data and the accuracy of the data analysis. Drs Viswanathan, Puckelwartz, Mehta, and Ramachandra contributed equally. Drs Knöll, Shim, McNally, and Sadayappan contributed equally as senior authors.

Concept and design: Viswanathan, Fritsche-Danielson, Bhat, Kuffel, Zilliox, Durai, Knoll, Shim, McNally, Sadayappan.

Acquisition, analysis, or interpretation of data: Viswanathan, Puckelwartz, Mehta, Ramachandra, Jagadeesan, Bhat, Wong, Kandoi, Schwanekamp, Kuffel, Pesce, Zilliox, Durai, Verma, Molokie, Suresh, Khoury, Thomas, Sanagala, Tang, Becker, Knoll, McNally, Sadayappan.

Drafting of the manuscript: Viswanathan, Puckelwartz, Mehta, Ramachandra, Kandoi, Kuffel, Durai, Khoury, Thomas, Knoll, Shim, McNally, Sadayappan.

Critical revision of the manuscript for important intellectual content: Viswanathan, Puckelwartz, Jagadeesan, Fritsche-Danielson, Bhat, Wong, Kandoi, Schwanekamp, Pesce, Zilliox, Durai, Verma, Molokie, Suresh, Khoury, Thomas, Sanagala, Tang, Becker, Knoll, McNally, Sadayappan.

Statistical analysis: Viswanathan, Puckelwartz, Jagadeesan, Pesce, Durai, Khoury, McNally, Sadayappan.

Obtained funding: Ramachandra, Bhat, Wong, Knoll, McNally, Sadayappan.

Administrative, technical, or material support: Viswanathan, Puckelwartz, Mehta, Jagadeesan, Fritsche-Danielson, Wong, Kandoi, Schwanekamp, Kuffel, Pesce, Zilliox, Durai, Verma, Molokie, Thomas, Sanagala, Becker, Sadayappan.

Supervision: Jagadeesan, Wong, Zilliox, Durai, Verma, Suresh, Thomas, Knoll, Shim, McNally, Sadayappan.

Conflict of Interest Disclosures: All authors have completed and submitted the ICMJE Form for Disclosure of Potential Conflicts of Interest. Dr McNally provides consulting services to AstraZeneca unrelated to the content of this manuscript. No other disclosures are reported.

Funding/Support: Funding for genome-phenome analysis was provided by the American Heart Association Cardiovascular Genome-Phenome Study (15CVGPSD27020012) and Catalyst (17CCRG33671128) (Dr Sadayappan) and Postdoctoral Fellowship (17POST33630157) (Dr Viswanathan). Drs McNally, and Shim, and Sadayappan received research funding from AstraZeneca Inc for the iPSC studies. Dr Sadayappan was supported by National Institutes of Health grants R01HL130356, R01HL105826, and K02HL114749. Drs McNally and Puckelwartz were supported by National Institutes of Health grant HL128075. Dr Schwanekamp was supported by T32 National Institutes of Health grant HL125204. Part of the study was supported by the National Research Foundation Singapore (NRF-CRP-2008-02), National Medical Research Council (NMRC/BNIG/1074/2012), Goh Foundation (Singapore) Duke-NUS Graduate Medical School (GCR/2013/008, GCR/2013/010 and GCR/2013/011), SingHealth Foundation (SHF/FG569P/2014 and SHF/FG630S/2014), and Biomedical Research Council Singapore (BMRC13/1/96/19/686A). Dr Knöll is supported by the Fondation LeDucq, Deutsche Forschungsgemeinschaft and Hjärt och Lungfonden, Sweden.

Role of the Funder/Sponsor: The funding sources had no role in the design and conduct of the study; collection, management, analysis, and interpretation of the data; preparation, review, or approval of the manuscript; and decision to submit the manuscript for publication

Disclaimer: Dr McNally is the Associate Editor for Translational Science of JAMA Cardiology. She was not involved in the evaluation or decision to accept this article for publication.

Additional Contributions: We thank Anuja Chitre, BS, Chong Hui Lua, BS, and Pritpal Singh, PhD, DUKE-NUS Medical School, Singapore, for their assistance in induced pluripotent stem cell maintenance and cardiomyocyte differentiation. They were funded through national competitive grants and they did not receive funding from other sponsors and agencies in their line of work. We thank Biobanking and Next Generation Sequencing core services of the NHRIS for providing genomic DNA of patients for initial screening and genomics analysis, respectively. We thank US South Asian individuals and various Tamil, Patel, Telugu, Hindu Heritage, Kongu and Malayalam associations in the United States for their support in collecting samples and performing the study.

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